01966nas a2200217   4500008004100000245010000041210007000141260001200211300001400223490000700237520123800244653001501482653001201497653001401509653002101523653002201544653003001566100002001596700001501616856011701631       2006                        eng d00aInferring the root of Isoëtes: Exploring alternatives in the absence of an acceptable outgroup0 aInferring the root of Isoëtes Exploring alternatives in the abse  c2006///  a258 - 2700 v313 aThe ancient divergence between the lycopsid genus Isoëtes and its closest living relative (Selaginella) has resulted in considerable morphological and genetic disparity, yet within Isoëtes there is remarkable morphological and genetic uniformity. This has made it difficult to identify the phylogenetic root of the genus. In this study, we addressed this problem and characterized the early branching patterns within Isoëtes using an expanded set of taxa and three molecular markers. We assessed the saturation in the molecular data sets, tested for differences in evolutionary rate, determined the stability of the ingroup topology, and evaluated the applicability of the molecular clock. We then explored three alternative rooting approaches: outgroup, midpoint, and maximum likelihood under the assumption of a molecular clock. Attempts to infer the root of Isoëtes using the outgroup approach were severely hindered by the effects of saturation, but the results from midpoint rooting and the enforcement of the molecular clock were highly consistent among the data sets. We identify the root of Isoëtes to be located among three major, highly supported clades. © Copyright 2006 by the American Society of Plant Taxonomists.10aIsoetaceae10aIsoetes10aLycophyte10aMidpoint rooting10aPhylogenetic root10aRelative rate comparisons1 aSchuettpelz, E.1 aHoot, S.B.  uhttp://www.scopus.com/inward/record.url?eid=2-s2.0-33745493624&partnerID=40&md5=8d3abb9eb77572545e97747f1aaf51a5